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Argyris Papantonis

TitleProf.
InstitutionUniversity Medical Centre Goettingen
DepartmentInstitute of Pathology, UMG
Addressother 37075
Phone+49 5513965734
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Mizi A, Zhang S, Papantonis A. Genome folding and refolding in differentiation and cellular senescence. Curr Opin Cell Biol. 2020 Sep 07; 67:56-63. PMID: 32911122.
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    2. Danieli A, Papantonis A. Spatial genome architecture and the emergence of malignancy. Hum Mol Genet. 2020 Jul 03. PMID: 32619215.
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    3. Casa V, Moronta Gines M, Gade Gusmao E, Slotman JA, Zirkel A, Josipovic N, Oole E, van IJcken WFJ, Houtsmuller AB, Papantonis A, Wendt KS. Redundant and specific roles of cohesin STAG subunits in chromatin looping and transcriptional control. Genome Res. 2020 Apr; 30(4):515-527. PMID: 32253279.
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    4. Übelmesser N, Papantonis A. Technologies to study spatial genome organization: beyond 3C. Brief Funct Genomics. 2019 11 19; 18(6):395-401. PMID: 31609405.
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    5. Weiterer SS, Meier-Soelch J, Georgomanolis T, Mizi A, Beyerlein A, Weiser H, Brant L, Mayr-Buro C, Jurida L, Beuerlein K, Müller H, Weber A, Tenekeci U, Dittrich-Breiholz O, Bartkuhn M, Nist A, Stiewe T, van IJcken WF, Riedlinger T, Schmitz ML, Papantonis A, Kracht M. Distinct IL-1a-responsive enhancers promote acute and coordinated changes in chromatin topology in a hierarchical manner. EMBO J. 2020 01 02; 39(1):e101533. PMID: 31701553.
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    6. Palikyras S, Papantonis A. Modes of phase separation affecting chromatin regulation. Open Biol. 2019 10 31; 9(10):190167. PMID: 31615334.
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    7. Lalioti ME, Kaplani K, Lokka G, Georgomanolis T, Kyrousi C, Dong W, Dunbar A, Parlapani E, Damianidou E, Spassky N, Kahle KT, Papantonis A, Lygerou Z, Taraviras S. GemC1 is a critical switch for neural stem cell generation in the postnatal brain. Glia. 2019 12; 67(12):2360-2373. PMID: 31328313.
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    8. Mizi A, Gade Gusmao E, Papantonis A. iHi-C 2.0: A simple approach for mapping native spatial chromatin organisation from low cell numbers. Methods. 2020 01 01; 170:33-37. PMID: 31283985.
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    9. Sen M, Wang X, Hamdan FH, Rapp J, Eggert J, Kosinsky RL, Wegwitz F, Kutschat AP, Younesi FS, Gaedcke J, Grade M, Hessmann E, Papantonis A, Str?bel P, Johnsen SA. ARID1A facilitates KRAS signaling-regulated enhancer activity in an AP1-dependent manner in colorectal cancer cells. Clin Epigenetics. 2019 06 19; 11(1):92. PMID: 31217031.
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    10. Gothe HJ, Bouwman BAM, Gusmao EG, Piccinno R, Petrosino G, Sayols S, Drechsel O, Minneker V, Josipovic N, Mizi A, Nielsen CF, Wagner EM, Takeda S, Sasanuma H, Hudson DF, Kindler T, Baranello L, Papantonis A, Crosetto N, Roukos V. Spatial Chromosome Folding and Active Transcription Drive DNA Fragility and Formation of Oncogenic MLL Translocations. Mol Cell. 2019 07 25; 75(2):267-283.e12. PMID: 31202576.
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    11. Lalioti ME, Arbi M, Loukas I, Kaplani K, Kalogeropoulou A, Lokka G, Kyrousi C, Mizi A, Georgomanolis T, Josipovic N, Gkikas D, Benes V, Politis PK, Papantonis A, Lygerou Z, Taraviras S. GemC1 governs multiciliogenesis through direct interaction with and transcriptional regulation of p73. J Cell Sci. 2019 06 03; 132(11). PMID: 31028178.
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    12. Ahuja G, Bartsch D, Yao W, Geissen S, Frank S, Aguirre A, Russ N, Messling JE, Dodzian J, Lagerborg KA, Vargas NE, Muck JS, Brodesser S, Baldus S, Sachinidis A, Hescheler J, Dieterich C, Trifunovic A, Papantonis A, Petrascheck M, Klinke A, Jain M, Valenzano DR, Kurian L. Loss of genomic integrity induced by lysosphingolipid imbalance drives ageing in the heart. . 2019 04; 20(4). PMID: 30886000.
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    13. Frank S, Ahuja G, Bartsch D, Russ N, Yao W, Kuo JC, Derks JP, Akhade VS, Kargapolova Y, Georgomanolis T, Messling JE, Gramm M, Brant L, Rehimi R, Vargas NE, Kuroczik A, Yang TP, Sahito RGA, Franzen J, Hescheler J, Sachinidis A, Peifer M, Rada-Iglesias A, Kanduri M, Costa IG, Kanduri C, Papantonis A, Kurian L. yylncT Defines a Class of Divergently Transcribed lncRNAs and Safeguards the T-mediated Mesodermal Commitment of Human PSCs. Cell Stem Cell. 2019 02 07; 24(2):318-327.e8. PMID: 30554961.
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    14. Rada-Iglesias A, Grosveld FG, Papantonis A. Forces driving the three-dimensional folding of eukaryotic genomes. Mol Syst Biol. 2018 06 01; 14(6):e8214. PMID: 29858282.
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    15. Zirkel A, Nikolic M, Sofiadis K, Mallm JP, Brackley CA, Gothe H, Drechsel O, Becker C, Altmüller J, Josipovic N, Georgomanolis T, Brant L, Franzen J, Koker M, Gusmao EG, Costa IG, Ullrich RT, Wagner W, Roukos V, Nürnberg P, Marenduzzo D, Rippe K, Papantonis A. HMGB2 Loss upon Senescence Entry Disrupts Genomic Organization and Induces CTCF Clustering across Cell Types. Mol Cell. 2018 05 17; 70(4):730-744.e6. PMID: 29706538.
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    16. Michieletto D, Chiang M, Colì D, Papantonis A, Orlandini E, Cook PR, Marenduzzo D. Shaping epigenetic memory via genomic bookmarking. Nucleic Acids Res. 2018 01 09; 46(1):83-93. PMID: 29190361.
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    17. Zirkel A, Papantonis A. Detecting Circular RNAs by RNA Fluorescence In Situ Hybridization. Methods Mol Biol. 2018; 1724:69-75. PMID: 29322441.
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    18. Nikolic M, Papantonis A, Rada-Iglesias A. GARLIC: a bioinformatic toolkit for aetiologically connecting diseases and cell type-specific regulatory maps. Hum Mol Genet. 2017 02 15; 26(4):742-752. PMID: 28007912.
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    19. Gabriel E, Ramani A, Karow U, Gottardo M, Natarajan K, Gooi LM, Goranci-Buzhala G, Krut O, Peters F, Nikolic M, Kuivanen S, Korhonen E, Smura T, Vapalahti O, Papantonis A, Schmidt-Chanasit J, Riparbelli M, Callaini G, Krönke M, Utermöhlen O, Gopalakrishnan J. Recent Zika Virus Isolates Induce Premature Differentiation of Neural Progenitors in Human Brain Organoids. Cell Stem Cell. 2017 03 02; 20(3):397-406.e5. PMID: 28132835.
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    20. Brant L, Georgomanolis T, Nikolic M, Brackley CA, Kolovos P, van Ijcken W, Grosveld FG, Marenduzzo D, Papantonis A. Exploiting native forces to capture chromosome conformation in mammalian cell nuclei. Mol Syst Biol. 2016 Dec 09; 12(12):891. PMID: 27940490.
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    21. Georgomanolis T, Sofiadis K, Papantonis A. Cutting a Long Intron Short: Recursive Splicing and Its Implications. Front Physiol. 2016; 7:598. PMID: 27965595.
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    22. Franzen J, Zirkel A, Blake J, Rath B, Benes V, Papantonis A, Wagner W. Senescence-associated DNA methylation is stochastically acquired in subpopulations of mesenchymal stem cells. Aging Cell. 2017 Feb; 16(1):183-191. PMID: 27785870.
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    23. Kolovos P, Georgomanolis T, Koeferle A, Larkin JD, Brant L, Nikolicc M, Gusmao EG, Zirkel A, Knoch TA, van Ijcken WF, Cook PR, Costa IG, Grosveld FG, Papantonis A. Binding of nuclear factor ?B to noncanonical consensus sites reveals its multimodal role during the early inflammatory response. Genome Res. 2016 11; 26(11):1478-1489. PMID: 27633323.
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    24. Melnik S, Caudron-Herger M, Brant L, Carr IM, Rippe K, Cook PR, Papantonis A. Isolation of the protein and RNA content of active sites of transcription from mammalian cells. Nat Protoc. 2016 Mar; 11(3):553-65. PMID: 26914315.
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    25. Kelly S, Georgomanolis T, Zirkel A, Diermeier S, O'Reilly D, Murphy S, Längst G, Cook PR, Papantonis A. Splicing of many human genes involves sites embedded within introns. Nucleic Acids Res. 2015 May 19; 43(9):4721-32. PMID: 25897131.
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    26. Caudron-Herger M, Cook PR, Rippe K, Papantonis A. Dissecting the nascent human transcriptome by analysing the RNA content of transcription factories. Nucleic Acids Res. 2015 Aug 18; 43(14):e95. PMID: 25897132.
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    27. Kelly S, Greenman C, Cook PR, Papantonis A. Exon Skipping Is Correlated with Exon Circularization. J Mol Biol. 2015 Jul 31; 427(15):2414-2417. PMID: 25728652.
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    28. Diermeier S, Kolovos P, Heizinger L, Schwartz U, Georgomanolis T, Zirkel A, Wedemann G, Grosveld F, Knoch TA, Merkl R, Cook PR, Längst G, Papantonis A. TNFa signalling primes chromatin for NF-?B binding and induces rapid and widespread nucleosome repositioning. Genome Biol. 2014 Dec 03; 15(12):536. PMID: 25608606.
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    29. Zirkel A, Papantonis A. Transcription as a force partitioning the eukaryotic genome. Biol Chem. 2014 Nov 01; 395(11):1301-5. PMID: 25205722.
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    30. Papantonis A, Swevers L, Iatrou K. Chorion genes: a landscape of their evolution, structure, and regulation. Annu Rev Entomol. 2015 Jan 07; 60:177-94. PMID: 25341099.
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    31. Brackley CA, Taylor S, Papantonis A, Cook PR, Marenduzzo D. Nonspecific bridging-induced attraction drives clustering of DNA-binding proteins and genome organization. Proc Natl Acad Sci U S A. 2013 Sep 17; 110(38):E3605-11. PMID: 24003126.
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    32. Papantonis A, Cook PR. Transcription factories: genome organization and gene regulation. Chem Rev. 2013 Nov 13; 113(11):8683-705. PMID: 23597155.
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    33. Larkin JD, Papantonis A, Cook PR. Promoter type influences transcriptional topography by targeting genes to distinct nucleoplasmic sites. J Cell Sci. 2013 May 01; 126(Pt 9):2052-9. PMID: 23444365.
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    34. Larkin JD, Papantonis A, Cook PR, Marenduzzo D. Space exploration by the promoter of a long human gene during one transcription cycle. Nucleic Acids Res. 2013 Feb 01; 41(4):2216-27. PMID: 23303786.
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    35. Papantonis A, Kohro T, Baboo S, Larkin JD, Deng B, Short P, Tsutsumi S, Taylor S, Kanki Y, Kobayashi M, Li G, Poh HM, Ruan X, Aburatani H, Ruan Y, Kodama T, Wada Y, Cook PR. TNFa signals through specialized factories where responsive coding and miRNA genes are transcribed. EMBO J. 2012 Nov 28; 31(23):4404-14. PMID: 23103767.
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    36. Larkin JD, Cook PR, Papantonis A. Dynamic reconfiguration of long human genes during one transcription cycle. Mol Cell Biol. 2012 Jul; 32(14):2738-47. PMID: 22586273.
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    37. Kolovos P, Knoch TA, Grosveld FG, Cook PR, Papantonis A. Enhancers and silencers: an integrated and simple model for their function. Epigenetics Chromatin. 2012 Jan 09; 5(1):1. PMID: 22230046.
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    38. Melnik S, Deng B, Papantonis A, Baboo S, Carr IM, Cook PR. The proteomes of transcription factories containing RNA polymerases I, II or III. Nat Methods. 2011 Sep 25; 8(11):963-8. PMID: 21946667.
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    39. Papantonis A, Cook PR. Fixing the model for transcription: the DNA moves, not the polymerase. Transcription. 2011 Jan-Feb; 2(1):41-4. PMID: 21326910.
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    40. Papantonis A, Larkin JD, Wada Y, Ohta Y, Ihara S, Kodama T, Cook PR. Active RNA polymerases: mobile or immobile molecular machines? PLoS Biol. 2010 Jul 13; 8(7):e1000419. PMID: 20644712.
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    41. Papantonis A, Cook PR. Genome architecture and the role of transcription. Curr Opin Cell Biol. 2010 Jun; 22(3):271-6. PMID: 20356724.
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    42. Lecanidou R, Papantonis A. Modeling bidirectional transcription using silkmoth chorion gene promoters. Organogenesis. 2010 Jan-Mar; 6(1):54-8. PMID: 20592866.
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    43. Lecanidou R, Papantonis A. Silkmoth chorion gene regulation revisited: promoter architecture as a key player. Insect Mol Biol. 2010 Apr; 19(2):141-51. PMID: 20002795.
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    44. Wada Y, Ohta Y, Xu M, Tsutsumi S, Minami T, Inoue K, Komura D, Kitakami J, Oshida N, Papantonis A, Izumi A, Kobayashi M, Meguro H, Kanki Y, Mimura I, Yamamoto K, Mataki C, Hamakubo T, Shirahige K, Aburatani H, Kimura H, Kodama T, Cook PR, Ihara S. A wave of nascent transcription on activated human genes. Proc Natl Acad Sci U S A. 2009 Oct 27; 106(43):18357-61. PMID: 19826084.
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    45. Papantonis A, Vanden Broeck J, Lecanidou R. Architectural factor HMGA induces promoter bending and recruits C/EBP and GATA during silkmoth chorion gene regulation. Biochem J. 2008 Nov 15; 416(1):85-97. PMID: 18636971.
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    46. Papantonis A, Tsatsarounos S, Vanden Broeck J, Lecanidou R. CHD1 assumes a central role during follicle development. J Mol Biol. 2008 Nov 28; 383(5):957-69. PMID: 18817785.
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    47. Papantonis A, Lecanidou R. A modified chromatin-immunoprecipitation protocol for silkmoth ovarian follicular cells reveals C/EBP and GATA binding modes on an early chorion gene promoter. Mol Biol Rep. 2009 Apr; 36(4):733-6. PMID: 18368513.
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    48. Papantonis A, Sourmeli S, Lecanidou R. Chorion gene activation and repression is dependent on BmC/EBP expression and binding to cognate cis-elements. Biochem Biophys Res Commun. 2008 May 09; 369(3):905-9. PMID: 18325322.
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    49. Sourmeli S, Papantonis A, Lecanidou R. BmCbZ, an insect-specific factor featuring a composite DNA-binding domain, interacts with BmC/EBPgamma. Biochem Biophys Res Commun. 2005 Dec 30; 338(4):1957-65. PMID: 16288982.
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    50. Sourmeli S, Papantonis A, Lecanidou R. A novel role for the Bombyx Slbo homologue, BmC/EBP, in insect choriogenesis. Biochem Biophys Res Commun. 2005 Nov 18; 337(2):713-9. PMID: 16202393.
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